Linkage of cold acclimation and disease resistance through plant-pathogen interaction pathway in Vitis amurensis grapevine.
Identifieur interne : 000496 ( Main/Exploration ); précédent : 000495; suivant : 000497Linkage of cold acclimation and disease resistance through plant-pathogen interaction pathway in Vitis amurensis grapevine.
Auteurs : Jiao Wu [République populaire de Chine] ; Yali Zhang ; Ling Yin ; Junjie Qu ; Jiang LuSource :
- Functional & integrative genomics [ 1438-7948 ] ; 2014.
Descripteurs français
- KwdFr :
- Acclimatation (génétique), Analyse de profil d'expression de gènes (MeSH), Annotation de séquence moléculaire (MeSH), Basse température (MeSH), Gènes de plante (MeSH), Interactions hôte-pathogène (génétique), Liaison génétique (MeSH), Réaction de polymérisation en chaine en temps réel (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Régulation négative (génétique), Résistance à la maladie (génétique), Résistance à la maladie (immunologie), Vitis (génétique), Vitis (immunologie).
- MESH :
- génétique : Acclimatation, Interactions hôte-pathogène, Régulation négative, Résistance à la maladie, Vitis.
- immunologie : Résistance à la maladie, Vitis.
- Analyse de profil d'expression de gènes, Annotation de séquence moléculaire, Basse température, Gènes de plante, Liaison génétique, Réaction de polymérisation en chaine en temps réel, Régulation de l'expression des gènes végétaux.
English descriptors
- KwdEn :
- Acclimatization (genetics), Cold Temperature (MeSH), Disease Resistance (genetics), Disease Resistance (immunology), Down-Regulation (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Genetic Linkage (MeSH), Host-Pathogen Interactions (genetics), Molecular Sequence Annotation (MeSH), Real-Time Polymerase Chain Reaction (MeSH), Vitis (genetics), Vitis (immunology).
- MESH :
- genetics : Acclimatization, Disease Resistance, Down-Regulation, Host-Pathogen Interactions, Vitis.
- immunology : Disease Resistance, Vitis.
- Cold Temperature, Gene Expression Profiling, Gene Expression Regulation, Plant, Genes, Plant, Genetic Linkage, Molecular Sequence Annotation, Real-Time Polymerase Chain Reaction.
Abstract
Low temperatures cause severe damage to none cold hardy grapevines. A preliminary survey with Solexa sequencing technology was used to analyze gene expression profiles of cold hardy Vitis amurensis 'Zuoshan-1' after cold acclimation at 4 °C for 48 h. A total of 16,750 and 18,068 putative genes were annotated for 4 °C-treated and control library, respectively. Among them, 393 genes were upregulated for at least 20-fold, while 69 genes were downregulated for at least 20-fold under the 4 °C treatment for 48 h. A subset of 101 genes from this survey was investigated further using reverse transcription polymerase chain reaction (RT-PCR). Genes associated with signaling events in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), including generation of calcium signals (CNGC, CMLs), jasmonic acid signal (JAZ1), oxidative burst (Rboh), and phosphorylation (FLS2, BAK, MEKK1, MKKs) cascades, were upregulated after cold acclimation. Disease resistance genes (RPM1, RPS5, RIN4, PBS1) in the process of effector-triggered immunity (ETI) were also upregulated in the current condition. Defense-related genes (WRKYs, PR1, MIN7) involved in both PTI and ETI processes were abundantly expressed after cold acclimation. Our results indicated that plant-pathogen interaction pathways were linked to the cold acclimation in V. amurensis grapevine. Other biotic- and abiotic-related genes, such as defense (protein phosphatase 2C, U-box domain proteins, NCED1, stilbene synthase), transcription (DREBs, MYBs, ERFs, ZFPs), signal transduction (kinase, calcium, and auxin signaling), transport (ATP-binding cassette (ABC) transporters, auxin:hydrogen symporter), and various metabolism, were also abundantly expressed in the cold acclimation of V. Amurensis 'Zuoshan-1' grapevine. This study revealed a series of critical genes and pathways to delineate important biological processes affected by low temperature in 'Zuoshan-1'.
DOI: 10.1007/s10142-014-0392-1
PubMed: 25154381
Affiliations:
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Vitis amurensis grapevine.</title><author><name sortKey="Wu, Jiao" sort="Wu, Jiao" uniqKey="Wu J" first="Jiao" last="Wu">Jiao Wu</name><affiliation wicri:level="1"><nlm:affiliation>Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083</wicri:regionArea><wicri:noRegion>100083</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Yali" sort="Zhang, Yali" uniqKey="Zhang Y" first="Yali" last="Zhang">Yali Zhang</name></author><author><name sortKey="Yin, Ling" sort="Yin, Ling" uniqKey="Yin L" first="Ling" last="Yin">Ling Yin</name></author><author><name sortKey="Qu, Junjie" sort="Qu, Junjie" uniqKey="Qu J" first="Junjie" last="Qu">Junjie Qu</name></author><author><name sortKey="Lu, Jiang" sort="Lu, Jiang" uniqKey="Lu J" first="Jiang" last="Lu">Jiang Lu</name></author></analytic><series><title level="j">Functional & integrative genomics</title><idno type="eISSN">1438-7948</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Acclimatization (genetics)</term><term>Cold Temperature (MeSH)</term><term>Disease Resistance (genetics)</term><term>Disease Resistance (immunology)</term><term>Down-Regulation (genetics)</term><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Genetic Linkage (MeSH)</term><term>Host-Pathogen Interactions (genetics)</term><term>Molecular Sequence Annotation (MeSH)</term><term>Real-Time Polymerase Chain Reaction (MeSH)</term><term>Vitis (genetics)</term><term>Vitis (immunology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Acclimatation (génétique)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Annotation de séquence moléculaire (MeSH)</term><term>Basse température (MeSH)</term><term>Gènes de plante (MeSH)</term><term>Interactions hôte-pathogène (génétique)</term><term>Liaison génétique (MeSH)</term><term>Réaction de polymérisation en chaine en temps réel (MeSH)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Régulation négative (génétique)</term><term>Résistance à la maladie (génétique)</term><term>Résistance à la maladie (immunologie)</term><term>Vitis (génétique)</term><term>Vitis (immunologie)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Acclimatization</term><term>Disease Resistance</term><term>Down-Regulation</term><term>Host-Pathogen Interactions</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Acclimatation</term><term>Interactions hôte-pathogène</term><term>Régulation négative</term><term>Résistance à la maladie</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Résistance à la maladie</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Disease Resistance</term><term>Vitis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cold Temperature</term><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Genetic Linkage</term><term>Molecular Sequence Annotation</term><term>Real-Time Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Annotation de séquence moléculaire</term><term>Basse température</term><term>Gènes de plante</term><term>Liaison génétique</term><term>Réaction de polymérisation en chaine en temps réel</term><term>Régulation de l'expression des gènes végétaux</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Low temperatures cause severe damage to none cold hardy grapevines. A preliminary survey with Solexa sequencing technology was used to analyze gene expression profiles of cold hardy Vitis amurensis 'Zuoshan-1' after cold acclimation at 4 °C for 48 h. A total of 16,750 and 18,068 putative genes were annotated for 4 °C-treated and control library, respectively. Among them, 393 genes were upregulated for at least 20-fold, while 69 genes were downregulated for at least 20-fold under the 4 °C treatment for 48 h. A subset of 101 genes from this survey was investigated further using reverse transcription polymerase chain reaction (RT-PCR). Genes associated with signaling events in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), including generation of calcium signals (CNGC, CMLs), jasmonic acid signal (JAZ1), oxidative burst (Rboh), and phosphorylation (FLS2, BAK, MEKK1, MKKs) cascades, were upregulated after cold acclimation. Disease resistance genes (RPM1, RPS5, RIN4, PBS1) in the process of effector-triggered immunity (ETI) were also upregulated in the current condition. Defense-related genes (WRKYs, PR1, MIN7) involved in both PTI and ETI processes were abundantly expressed after cold acclimation. Our results indicated that plant-pathogen interaction pathways were linked to the cold acclimation in V. amurensis grapevine. Other biotic- and abiotic-related genes, such as defense (protein phosphatase 2C, U-box domain proteins, NCED1, stilbene synthase), transcription (DREBs, MYBs, ERFs, ZFPs), signal transduction (kinase, calcium, and auxin signaling), transport (ATP-binding cassette (ABC) transporters, auxin:hydrogen symporter), and various metabolism, were also abundantly expressed in the cold acclimation of V. Amurensis 'Zuoshan-1' grapevine. This study revealed a series of critical genes and pathways to delineate important biological processes affected by low temperature in 'Zuoshan-1'. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25154381</PMID><DateCompleted><Year>2015</Year><Month>07</Month><Day>13</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1438-7948</ISSN><JournalIssue CitedMedium="Internet"><Volume>14</Volume><Issue>4</Issue><PubDate><Year>2014</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Functional & integrative genomics</Title><ISOAbbreviation>Funct Integr Genomics</ISOAbbreviation></Journal><ArticleTitle>Linkage of cold acclimation and disease resistance through plant-pathogen interaction pathway in Vitis amurensis grapevine.</ArticleTitle><Pagination><MedlinePgn>741-55</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s10142-014-0392-1</ELocationID><Abstract><AbstractText>Low temperatures cause severe damage to none cold hardy grapevines. A preliminary survey with Solexa sequencing technology was used to analyze gene expression profiles of cold hardy Vitis amurensis 'Zuoshan-1' after cold acclimation at 4 °C for 48 h. A total of 16,750 and 18,068 putative genes were annotated for 4 °C-treated and control library, respectively. Among them, 393 genes were upregulated for at least 20-fold, while 69 genes were downregulated for at least 20-fold under the 4 °C treatment for 48 h. A subset of 101 genes from this survey was investigated further using reverse transcription polymerase chain reaction (RT-PCR). Genes associated with signaling events in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), including generation of calcium signals (CNGC, CMLs), jasmonic acid signal (JAZ1), oxidative burst (Rboh), and phosphorylation (FLS2, BAK, MEKK1, MKKs) cascades, were upregulated after cold acclimation. Disease resistance genes (RPM1, RPS5, RIN4, PBS1) in the process of effector-triggered immunity (ETI) were also upregulated in the current condition. Defense-related genes (WRKYs, PR1, MIN7) involved in both PTI and ETI processes were abundantly expressed after cold acclimation. Our results indicated that plant-pathogen interaction pathways were linked to the cold acclimation in V. amurensis grapevine. Other biotic- and abiotic-related genes, such as defense (protein phosphatase 2C, U-box domain proteins, NCED1, stilbene synthase), transcription (DREBs, MYBs, ERFs, ZFPs), signal transduction (kinase, calcium, and auxin signaling), transport (ATP-binding cassette (ABC) transporters, auxin:hydrogen symporter), and various metabolism, were also abundantly expressed in the cold acclimation of V. Amurensis 'Zuoshan-1' grapevine. This study revealed a series of critical genes and pathways to delineate important biological processes affected by low temperature in 'Zuoshan-1'. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Jiao</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Yali</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Yin</LastName><ForeName>Ling</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Qu</LastName><ForeName>Junjie</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Jiang</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>08</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Funct Integr Genomics</MedlineTA><NlmUniqueID>100939343</NlmUniqueID><ISSNLinking>1438-793X</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000064" MajorTopicYN="N">Acclimatization</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003080" MajorTopicYN="Y">Cold Temperature</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="Y">immunology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015536" MajorTopicYN="N">Down-Regulation</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="Y">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060888" MajorTopicYN="N">Real-Time Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D027843" MajorTopicYN="N">Vitis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="Y">immunology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>12</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>08</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2014</Year><Month>08</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>8</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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